Transcript: ENST00000485975.1 CARD9-007

Description

caspase recruitment domain family, member 9 [Source:HGNC Symbol;Acc:16391]

Gene Synonyms

C9orf151, CANDF2, HEP, HEP1, TIMM15, ZIM17, bA413M3.2, hCARD9

Location

Chromosome 9: 139,258,409-139,265,345 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4532 variant alleles and maps to 606 oligo probes.

Gene

This transcript is a product of gene ENSG00000187796.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371732.5	CARD9-004	2123	536aa	ENSP00000360797.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6997	Q9H257	NM_052813.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371734.3	CARD9-001	1814	492aa	ENSP00000360799.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48057	Q9H257	NM_052814.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000315908.7	CARD9-201	1267	366aa	ENSP00000323719.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9H257	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489932.2	CARD9-002	1912	366aa	ENSP00000451368.1	Nonsense mediated decay		Q9H257	-	-
ENST00000460290.1	CARD9-003	1061	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000485975.1	CARD9-007	4574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481053.1	CARD9-005	4060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000556340.1	CARD9-008	1005	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 4,574 bps,

Version

ENST00000485975.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000351709 (version 1)

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Transcript: ENST00000485975.1 CARD9-007

Summary