Transcript: ENST00000426508.2 IFT140-001

Description

intraflagellar transport 140 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:29077]

Gene Synonyms

KIAA0590, MZSDS, WDTC2, c305C8.4, c380F5.1, gs114

Location

Chromosome 16: 1,560,428-1,662,111 reverse strand.

About this transcript

This transcript has 31 exons, is annotated with 17 domains and features, is associated with 54153 variant alleles and maps to 810 oligo probes.

Gene

This transcript is a product of gene ENSG00000187535.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000426508.2	IFT140-001	5270	1462aa	ENSP00000406012.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10439	H3BNC5 H3BTA5 Q96RY7 Q9UG52	NM_014714.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000361339.5	IFT140-006	2987	656aa	ENSP00000354895.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UG52	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569646.1	IFT140-007	643	120aa	ENSP00000454781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BNC5 H3BTA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000569812.1	IFT140-012	452	113aa	ENSP00000457092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BTA5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000568837.1	IFT140-011	414	125aa	ENSP00000458439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0Y8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000397417.2	IFT140-002	4023	206aa	ENSP00000380562.2	Nonsense mediated decay		J3KPW0	-	-
ENST00000439987.2	IFT140-003	2580	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000565298.1	IFT140-005	4727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561954.1	IFT140-009	826	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566818.1	IFT140-010	722	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566052.1	IFT140-008	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 29, Transcript length: 5,270 bps, Translation length: 1,462 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96RY7

CCDS

This transcript is a member of the Human CCDS set: CCDS10439

Version

ENST00000426508.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000250438 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000426508.2 IFT140-001

Summary