Transcript: ENST00000523044.1 SLC36A2-005

Description

solute carrier family 36 (proton/amino acid symporter), member 2 [Source:HGNC Symbol;Acc:18762]

Gene Synonyms

PAT2, TRAMD1, tramdorin

Location

Chromosome 5: 150,704,712-150,712,885 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 3330 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSG00000186335.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335244.4	SLC36A2-001	3421	483aa	ENSP00000334223.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4315	E5RGH8 Q495M3	NM_181776.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450886.1	SLC36A2-201	2459	207aa	ENSP00000399479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q495M3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000521967.1	SLC36A2-004	1471	395aa	ENSP00000430535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RGH8 E5RJJ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000523044.1	SLC36A2-005	403	107aa	ENSP00000428634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518617.1	SLC36A2-002	2156	147aa	ENSP00000430149.1	Nonsense mediated decay		E5RGH8	-	-
ENST00000518280.1	SLC36A2-006	2059	147aa	ENSP00000428453.1	Nonsense mediated decay		E5RGH8	-	-
ENST00000522829.1	SLC36A2-003	1068	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 403 bps, Translation length: 107 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000523044.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000373821 (version 1)

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Transcript: ENST00000523044.1 SLC36A2-005

Summary