Transcript: ENST00000332782.2 STAC3-001

Description

SH3 and cysteine rich domain 3 [Source:HGNC Symbol;Acc:28423]

Gene Synonyms

MGC2793, NAM

Location

Chromosome 12: 57,637,236-57,644,976 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 28 domains and features, is associated with 4173 variant alleles and maps to 396 oligo probes.

Gene

This transcript is a product of gene ENSG00000185482.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000332782.2	STAC3-001	1656	364aa	ENSP00000329200.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8936	B4DUK9 G3V5D4 Q96MF2	NM_145064.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554578.1	STAC3-003	1580	325aa	ENSP00000452068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66406	B4DUK9 Q96MF2	NM_001286256.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546246.2	STAC3-004	1014	178aa	ENSP00000441515.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66405	B4DUK9	NM_001286257.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000553489.1	STAC3-005	795	168aa	ENSP00000452299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V5D4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557176.1	STAC3-002	1143	104aa	ENSP00000450740.1	Nonsense mediated decay		G3V2L9	-	-
ENST00000554003.1	STAC3-007	613	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000553294.1	STAC3-006	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,656 bps, Translation length: 364 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MF2

CCDS

This transcript is a member of the Human CCDS set: CCDS8936

Version

ENST00000332782.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000412724 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000332782.2 STAC3-001

Summary