Transcript: ENST00000380637.3 SH3BGR-002

Description

SH3 domain binding glutamic acid-rich protein [Source:HGNC Symbol;Acc:10822]

Gene Synonyms

21-GARP

Location

Chromosome 21: 40,817,781-40,887,433 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 8 domains and features, is associated with 28604 variant alleles and maps to 413 oligo probes.

Gene

This transcript is a product of gene ENSG00000185437.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333634.4	SH3BGR-001	1251	239aa	ENSP00000332513.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13666	C9JX40 P55822	NM_007341.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380637.3	SH3BGR-002	1014	128aa	ENSP00000370011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33560	C9JX40 P55822	NM_001001713.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452550.1	SH3BGR-008	865	137aa	ENSP00000405675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJT2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000380634.1	SH3BGR-007	816	128aa	ENSP00000370008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33560	C9JX40 P55822	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000458295.1	SH3BGR-004	812	97aa	ENSP00000404980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JJT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380631.1	SH3BGR-006	780	128aa	ENSP00000370005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33560	C9JX40 P55822	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000440288.2	SH3BGR-005	585	106aa	ENSP00000401572.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JX40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000447939.1	SH3BGR-009	512	54aa	ENSP00000403115.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1Y8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423596.1	SH3BGR-010	246	81aa	ENSP00000413981.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C3V3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 5, Transcript length: 1,014 bps, Translation length: 128 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P55822

CCDS

This transcript is a member of the Human CCDS set: CCDS33560

Version

ENST00000380637.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000157378 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000380637.3 SH3BGR-002

Summary