Transcript: ENST00000375618.4 C11orf88-001

Description

chromosome 11 open reading frame 88 [Source:HGNC Symbol;Acc:25061]

Gene Synonyms

FLJ46266

Location

About this transcript

This transcript has 6 exons, is annotated with 3 domains and features, is associated with 8250 variant alleles and maps to 274 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000332814.6	C11orf88-004	795	196aa	ENSP00000333845.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41712	E9PN74 Q6PI97	NM_207430.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529167.1	C11orf88-002	3099	178aa	ENSP00000432911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN74	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375618.4	C11orf88-001	712	169aa	ENSP00000364768.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41713	Q6PI97	NM_001100388.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529661.1	C11orf88-003	624	29aa	ENSP00000435029.1	Nonsense mediated decay		H0YE60	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 712 bps, Translation length: 169 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6PI97

CCDS

This transcript is a member of the Human CCDS set: CCDS41713

Version

ENST00000375618.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000391181 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.