Transcript: ENST00000484050.1 LYSMD4-006

Description

LysM, putative peptidoglycan-binding, domain containing 4 [Source:HGNC Symbol;Acc:26571]

Gene Synonyms

FLJ33008

Location

Chromosome 15: 100,269,703-100,273,766 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2238 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSG00000183060.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344791.2	LYSMD4-001	2885	297aa	ENSP00000342840.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10381	B3KWE4 Q5XG99	NM_152449.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545021.1	LYSMD4-202	3042	170aa	ENSP00000445357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66876	B3KWE4	NM_001284422.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000332728.4	LYSMD4-201	2790	296aa	ENSP00000333008.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66877	B3KWE4 Q5XG99	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409796.1	LYSMD4-005	2672	296aa	ENSP00000386283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS66877	B3KWE4 Q5XG99	NM_001284418.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450512.1	LYSMD4-002	559	123aa	ENSP00000400054.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J1B9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000604213.1	LYSMD4-008	2356	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496108.1	LYSMD4-003	2222	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000484050.1	LYSMD4-006	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479791.1	LYSMD4-004	3001	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493256.1	LYSMD4-007	880	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 551 bps,

Version

ENST00000484050.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000335635 (version 1)

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Transcript: ENST00000484050.1 LYSMD4-006

Summary