Transcript: ENST00000328642.7 SYNM-201

Description

synemin, intermediate filament protein [Source:HGNC Symbol;Acc:24466]

Gene Synonyms

DMN, KIAA0353, SYN

Location

Chromosome 15: 99,645,286-99,675,770 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 19 domains and features, is associated with 15542 variant alleles and maps to 358 oligo probes.

Gene

This transcript is a product of gene ENSG00000182253.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000336292.6	SYNM-202	7322	1564aa	ENSP00000336775.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O15061	NM_145728.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328642.7	SYNM-201	6386	1252aa	ENSP00000330469.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JIE4 H0YL34	NM_015286.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560674.1	SYNM-003	5908	967aa	ENSP00000453040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0YL34	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561323.1	SYNM-001	7393	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000558420.1	SYNM-002	6406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000561306.1	SYNM-004	3959	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 6,386 bps, Translation length: 1,252 residues

Version

ENST00000328642.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Frameshift introns

Frameshift introns occur at intron number(s) 1.

Stop codons

This transcript has a variant, rs5030699, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, ESP6500:African_American.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000328642.7 SYNM-201

Summary