Transcript: ENST00000560674.1 SYNM-003

Description

synemin, intermediate filament protein [Source:HGNC Symbol;Acc:24466]

Gene Synonyms

DMN, KIAA0353, SYN

Location

Chromosome 15: 99,638,420-99,675,798 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 19212 variant alleles and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSG00000182253.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000336292.6	SYNM-202	7322	1564aa	ENSP00000336775.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O15061	NM_145728.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000328642.7	SYNM-201	6386	1252aa	ENSP00000330469.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9JIE4 H0YL34	NM_015286.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560674.1	SYNM-003	5908	967aa	ENSP00000453040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0YL34	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000561323.1	SYNM-001	7393	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000558420.1	SYNM-002	6406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000561306.1	SYNM-004	3959	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 5,908 bps, Translation length: 967 residues

Version

ENST00000560674.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs5030699, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000415698 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000560674.1 SYNM-003

Summary