Transcript: ENST00000574220.1 SLC47A2-011

Description

solute carrier family 47 (multidrug and toxin extrusion), member 2 [Source:HGNC Symbol;Acc:26439]

Gene Synonyms

FLJ31196, MATE2, MATE2-B, MATE2-K, MATE2K

Location

Chromosome 17: 19,606,423-19,618,191 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 5405 variant alleles and maps to 224 oligo probes.

Gene

This transcript is a product of gene ENSG00000180638.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000325411.5	SLC47A2-002	2258	602aa	ENSP00000326671.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11211	Q86VL8	NM_152908.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000350657.5	SLC47A2-001	2285	580aa	ENSP00000338084.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58530	Q86VL8	NM_001256663.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433844.2	SLC47A2-008	1264	363aa	ENSP00000391848.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JAE6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000574239.1	SLC47A2-010	1962	219aa	ENSP00000458694.1	Nonsense mediated decay		Q86VL8	-	-
ENST00000463318.1	SLC47A2-003	2742	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000456947.3	SLC47A2-013	3114	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467379.1	SLC47A2-006	2538	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467609.1	SLC47A2-005	2201	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000483510.2	SLC47A2-007	991	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000574220.1	SLC47A2-011	965	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 965 bps,

Version

ENST00000574220.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441125 (version 1)

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Transcript: ENST00000574220.1 SLC47A2-011

Summary