Transcript: ENST00000583276.1 ALOX12B-003

Description

arachidonate 12-lipoxygenase, 12R type [Source:HGNC Symbol;Acc:430]

Gene Synonyms

12R-LOX, ARCI2

Location

About this transcript

This transcript has 5 exons, is associated with 2211 variant alleles and maps to 143 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000319144.4	ALOX12B-001	2502	701aa	ENSP00000315167.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11129	O75342	NM_001139.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000577351.1	ALOX12B-004	644	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000583276.1	ALOX12B-003	867	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000584116.1	ALOX12B-002	668	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 867 bps,

Version

ENST00000583276.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000441472 (version 1)