Transcript: ENST00000586967.1 CALR-007

Description

calreticulin [Source:HGNC Symbol;Acc:1455]

Gene Synonyms

CRT, CRTC, FLJ26680, HEL-S-99n, RO, SSA, cC1qR

Location

Chromosome 19: 13,054,687-13,055,303 forward strand.

About this transcript

This transcript has 2 exons, is associated with 437 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000179218.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316448.5	CALR-001	1903	417aa	ENSP00000320866.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12288	B4E2Y9 P27797	NM_004343.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586760.1	CALR-006	913	163aa	ENSP00000465918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000588454.1	CALR-008	776	247aa	ENSP00000465105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586967.1	CALR-007	394	13aa	ENSP00000466037.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000587486.2	CALR-003	957	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000590325.1	CALR-004	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586803.1	CALR-005	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 394 bps, Translation length: 13 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000586967.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000451957 (version 1)

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Transcript: ENST00000586967.1 CALR-007

Summary