Transcript: ENST00000314606.4 FARSA-001

Description

phenylalanyl-tRNA synthetase, alpha subunit [Source:HGNC Symbol;Acc:3592]

Gene Synonyms

CML33, FARS, FARSL, FARSLA, FRSA, PheHA

Location

Chromosome 19: 13,033,294-13,044,529 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 5646 variant alleles and maps to 557 oligo probes.

Gene

This transcript is a product of gene ENSG00000179115.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000314606.4	FARSA-001	1814	508aa	ENSP00000320309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12287	Q6IBR2 Q9Y285	NM_004461.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000588025.1	FARSA-006	2057	548aa	ENSP00000468051.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER00	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000423140.2	FARSA-002	1720	477aa	ENSP00000396548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E363	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000593021.1	FARSA-005	1135	378aa	ENSP00000467384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000587981.1	FARSA-007	521	168aa	ENSP00000465402.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EK06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587488.1	FARSA-010	514	159aa	ENSP00000468384.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000586146.1	FARSA-004	1707	235aa	ENSP00000468068.1	Nonsense mediated decay		K7ER16	-	-
ENST00000588965.1	FARSA-003	1831	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592662.1	FARSA-008	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586280.1	FARSA-009	803	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,814 bps, Translation length: 508 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y285

CCDS

This transcript is a member of the Human CCDS set: CCDS12287

Version

ENST00000314606.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000451935 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000314606.4 FARSA-001

Summary