Transcript: ENST00000532998.1 TMEM107-005

Description

transmembrane protein 107 [Source:HGNC Symbol;Acc:28128]

Gene Synonyms

GRVS638, MGC10744, PRO1268

Location

Chromosome 17: 8,077,060-8,079,691 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 1403 variant alleles and maps to 686 oligo probes.

Gene

This transcript is a product of gene ENSG00000179029.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316425.5	TMEM107-003	756	146aa	ENSP00000314116.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11132	Q6UX40	NM_032354.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000532998.1	TMEM107-005	2358	107aa	ENSP00000433148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449985.2	TMEM107-004	1210	35aa	ENSP00000404753.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2RDT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437139.2	TMEM107-002	747	140aa	ENSP00000402732.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45607	Q6UX40	NM_183065.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533070.1	TMEM107-001	726	139aa	ENSP00000436674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6UX40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431792.2	TMEM107-010	455	74aa	ENSP00000389420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIH0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526920.1	TMEM107-008	1151	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529756.1	TMEM107-007	830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000417073.2	TMEM107-009	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,358 bps, Translation length: 107 residues

Version

ENST00000532998.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs8064449, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) ESP6500:European_American, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HAPMAP-CHB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388843 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000532998.1 TMEM107-005

Summary