Transcript: ENST00000532998.1 TMEM107-005

Description

transmembrane protein 107 [Source:HGNC Symbol;Acc:28128]

Gene Synonyms

GRVS638, MGC10744, PRO1268

Location

Chromosome 17: 8,077,060-8,079,691 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 1403 variant alleles and maps to 686 oligo probes.

Gene

This transcript is a product of gene ENSG00000179029.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000532998.1	TMEM107-005	2358	107aa	ENSP00000433148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KNL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449985.2	TMEM107-004	1210	35aa	ENSP00000404753.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B2RDT5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316425.5	TMEM107-003	756	146aa	ENSP00000314116.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11132	Q6UX40	NM_032354.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000437139.2	TMEM107-002	747	140aa	ENSP00000402732.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45607	Q6UX40	NM_183065.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000533070.1	TMEM107-001	726	139aa	ENSP00000436674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6UX40	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431792.2	TMEM107-010	455	74aa	ENSP00000389420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PIH0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000526920.1	TMEM107-008	1151	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000529756.1	TMEM107-007	830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000417073.2	TMEM107-009	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 2,358 bps, Translation length: 107 residues

Version

ENST00000532998.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs8064449, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-CHB, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-MEX, CSHL-HAPMAP:HAPMAP-LWK, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-CHD.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000388843 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000532998.1 TMEM107-005

Summary