Transcript: ENST00000453259.2 LYSMD3-004

Description

LysM, putative peptidoglycan-binding, domain containing 3 [Source:HGNC Symbol;Acc:26969]

Gene Synonyms

FLJ13542

Location

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 4222 variant alleles and maps to 137 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315948.6	LYSMD3-002	4259	306aa	ENSP00000314518.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43338	A8K613 Q7Z3D4	NM_198273.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000500869.2	LYSMD3-003	3863	150aa	ENSP00000427020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3D4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509384.1	LYSMD3-001	1538	127aa	ENSP00000427683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68911	Q7Z3D4	NM_001286812.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453259.2	LYSMD3-004	553	90aa	ENSP00000405507.2	Nonsense mediated decay		G5E9N8	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 553 bps, Translation length: 90 residues

Version

ENST00000453259.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000369990 (version 1)