Transcript: ENST00000315948.6 LYSMD3-002

Description

LysM, putative peptidoglycan-binding, domain containing 3 [Source:HGNC Symbol;Acc:26969]

Gene Synonyms

FLJ13542

Location

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 5879 variant alleles and maps to 375 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000315948.6	LYSMD3-002	4259	306aa	ENSP00000314518.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43338	A8K613 Q7Z3D4	NM_198273.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000500869.2	LYSMD3-003	3863	150aa	ENSP00000427020.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7Z3D4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509384.1	LYSMD3-001	1538	127aa	ENSP00000427683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS68911	Q7Z3D4	NM_001286812.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453259.2	LYSMD3-004	553	90aa	ENSP00000405507.2	Nonsense mediated decay		G5E9N8	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 4,259 bps, Translation length: 306 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7Z3D4

CCDS

This transcript is a member of the Human CCDS set: CCDS43338

Version

ENST00000315948.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000369987 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.