Transcript: ENST00000533626.1 EIF3F-001

Description

eukaryotic translation initiation factor 3, subunit F [Source:HGNC Symbol;Acc:3275]

Gene Synonyms

EIF3S5, eIF3-epsilon, eIF3-p47, eIF3f

Location

Chromosome 11: 7,991,798-8,023,409 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 6 domains and features, is associated with 15043 variant alleles and maps to 958 oligo probes.

Gene

This transcript is a product of gene ENSG00000175390.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000533626.1	EIF3F-001	7540	357aa	ENSP00000431800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7785	B4DEW9 O00303	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537635.1	EIF3F-203	1684	372aa	ENSP00000442283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KSH1 B4DEW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309828.4	EIF3F-201	1254	357aa	ENSP00000310040.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7785	B4DEW9 O00303	NM_003754.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449102.2	EIF3F-202	1068	208aa	ENSP00000396929.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DEW9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531572.1	EIF3F-009	485	100aa	ENSP00000434286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YDT6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531329.1	EIF3F-004	1072	124aa	ENSP00000432489.1	Nonsense mediated decay		E9PQV8	-	-
ENST00000530219.1	EIF3F-005	2110	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528653.1	EIF3F-006	739	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000528763.1	EIF3F-008	609	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532882.1	EIF3F-007	454	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 7,540 bps, Translation length: 357 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00303

CCDS

This transcript is a member of the Human CCDS set: CCDS7785

Version

ENST00000533626.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000385713 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000533626.1 EIF3F-001

Summary