Transcript: ENST00000568875.1 SNAPC5-002

Description

small nuclear RNA activating complex, polypeptide 5, 19kDa [Source:HGNC Symbol;Acc:15484]

Gene Synonyms

SNAP19

Location

Chromosome 15: 66,785,806-66,790,118 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 2182 variant alleles and maps to 334 oligo probes.

Gene

This transcript is a product of gene ENSG00000174446.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000316634.5	SNAPC5-001	1002	98aa	ENSP00000319597.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10217	O75971	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000563480.2	SNAPC5-006	920	98aa	ENSP00000457892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10217	O75971	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000307979.7	SNAPC5-003	794	68aa	ENSP00000308439.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O75971	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395589.2	SNAPC5-008	749	98aa	ENSP00000378954.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10217	O75971	NM_006049.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000566658.1	SNAPC5-009	574	67aa	ENSP00000456716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BSI3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568875.1	SNAPC5-002	1741	83aa	ENSP00000455680.1	Nonsense mediated decay		H3BQA0	-	-
ENST00000565465.1	SNAPC5-005	1069	67aa	ENSP00000455626.1	Nonsense mediated decay		H3BSI3	-	-
ENST00000562411.1	SNAPC5-007	587	98aa	ENSP00000454421.1	Nonsense mediated decay	CCDS10217	O75971	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,741 bps, Translation length: 83 residues

Version

ENST00000568875.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420728 (version 1)

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Transcript: ENST00000568875.1 SNAPC5-002

Summary