Transcript: ENST00000348795.4 SNCG-001

Description

synuclein, gamma (breast cancer-specific protein 1) [Source:HGNC Symbol;Acc:11141]

Gene Synonyms

BCSG1, PERSYN, PRSN, SR, persyn

Location

Chromosome 10: 88,718,387-88,722,922 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 2256 variant alleles and maps to 300 oligo probes.

Gene

This transcript is a product of gene ENSG00000173267.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372017.3	SNCG-002	701	127aa	ENSP00000361087.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7380	O76070 Q6FHG5	NM_003087.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000348795.4	SNCG-001	684	126aa	ENSP00000344658.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W754	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483064.1	SNCG-003	794	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465679.1	SNCG-004	641	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 684 bps, Translation length: 126 residues

Version

ENST00000348795.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs9864, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) ESP6500:African_American, CSHL-HAPMAP:HapMap-CEU, ESP6500:European_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000049166 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000348795.4 SNCG-001

Summary