Transcript: ENST00000533698.1 RNASEH2C-007

Description

ribonuclease H2, subunit C [Source:HGNC Symbol;Acc:24116]

Gene Synonyms

AGS3, AYP1

Location

Chromosome 11: 65,486,007-65,487,939 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 1303 variant alleles and maps to 235 oligo probes.

Gene

This transcript is a product of gene ENSG00000172922.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000308418.4	RNASEH2C-001	2794	164aa	ENSP00000308193.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8111	E9PKP0 Q8TDP1	NM_032193.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528220.1	RNASEH2C-002	1337	81aa	ENSP00000431555.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PKP0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527610.1	RNASEH2C-005	835	247aa	ENSP00000432897.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PN81	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531596.1	RNASEH2C-006	968	158aa	ENSP00000435717.1	Nonsense mediated decay		E9PKP0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000534482.1	RNASEH2C-008	913	129aa	ENSP00000432081.1	Nonsense mediated decay		E9PKP0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533698.1	RNASEH2C-007	710	124aa	ENSP00000434996.1	Nonsense mediated decay		E9PKP0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530192.1	RNASEH2C-004	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 710 bps, Translation length: 124 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000533698.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000390695 (version 1)

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Transcript: ENST00000533698.1 RNASEH2C-007

Summary