Transcript: ENST00000461098.1 HCFC1-002

Description

host cell factor C1 (VP16-accessory protein) [Source:HGNC Symbol;Acc:4839]

Gene Synonyms

CFF, HCF-1, HCF1, HFC1, MGC70925, MRX3, VCAF

Location

Chromosome X: 153,225,460-153,227,718 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 808 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000172534.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310441.7	HCFC1-001	8869	2035aa	ENSP00000309555.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44020	P51610 Q05C05	NM_005334.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369984.4	HCFC1-003	8375	2080aa	ENSP00000359001.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NEM2 Q05C05	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354233.3	HCFC1-201	8213	1966aa	ENSP00000346174.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P51610	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444191.1	HCFC1-004	3624	611aa	ENSP00000399589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461098.1	HCFC1-002	379	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 379 bps,

Version

ENST00000461098.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000061100 (version 2)

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Transcript: ENST00000461098.1 HCFC1-002

Summary