Transcript: ENST00000310441.7 HCFC1-001

Description

host cell factor C1 (VP16-accessory protein) [Source:HGNC Symbol;Acc:4839]

Gene Synonyms

CFF, HCF-1, HCF1, HFC1, MGC70925, MRX3, VCAF

Location

About this transcript

This transcript has 26 exons, is annotated with 45 domains and features, is associated with 9929 variant alleles and maps to 967 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000310441.7	HCFC1-001	8869	2035aa	ENSP00000309555.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44020	P51610 Q05C05	NM_005334.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000369984.4	HCFC1-003	8375	2080aa	ENSP00000359001.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NEM2 Q05C05	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000354233.3	HCFC1-201	8213	1966aa	ENSP00000346174.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P51610	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444191.1	HCFC1-004	3624	611aa	ENSP00000399589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000461098.1	HCFC1-002	379	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 26, Transcript length: 8,869 bps, Translation length: 2,035 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P51610

CCDS

This transcript is a member of the Human CCDS set: CCDS44020

Version

ENST00000310441.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000061099 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.