Transcript: ENST00000428025.2 POLR1C-009

Description

polymerase (RNA) I polypeptide C, 30kDa [Source:HGNC Symbol;Acc:20194]

Gene Synonyms

POLR1E, RPA39, RPA40, RPA5, RPAC1, TCS3

Location

Chromosome 6: 43,477,440-43,488,048 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 5816 variant alleles and maps to 397 oligo probes.

Gene

This transcript is a product of gene ENSG00000171453.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000372389.3	POLR1C-008	1355	346aa	ENSP00000361465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4901	D6RDJ3 O15160 Q96HT3	NM_203290.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000304004.3	POLR1C-006	1280	342aa	ENSP00000307212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3 O15160	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000372344.2	POLR1C-005	1119	296aa	ENSP00000361419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3 E7EQB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428025.2	POLR1C-009	576	124aa	ENSP00000395401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDJ3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000423780.1	POLR1C-007	418	140aa	ENSP00000409536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000455605.2	POLR1C-010	1882	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481352.2	POLR1C-004	1725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488601.2	POLR1C-001	973	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000512472.1	POLR1C-002	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 576 bps, Translation length: 124 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000428025.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000040653 (version 2)

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Transcript: ENST00000428025.2 POLR1C-009

Summary