Transcript: ENST00000549016.1 CHST11-005

Description

carbohydrate (chondroitin 4) sulfotransferase 11 [Source:HGNC Symbol;Acc:17422]

Gene Synonyms

C4ST, C4ST-1, C4ST1, C4St-1, HSA269537

Location

Chromosome 12: 104,982,626-105,151,117 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 67885 variant alleles and maps to 169 oligo probes.

Gene

This transcript is a product of gene ENSG00000171310.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303694.5	CHST11-001	5709	352aa	ENSP00000305725.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9099	F8VXK3 Q9NPF2	NM_018413.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549260.1	CHST11-002	5696	347aa	ENSP00000450004.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55878	F8VXK3 Q9NPF2	NM_001173982.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547956.1	CHST11-007	936	77aa	ENSP00000449093.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXK7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546689.1	CHST11-006	756	72aa	ENSP00000448678.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VRG6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000549016.1	CHST11-005	573	158aa	ENSP00000449095.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXK3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000550711.1	CHST11-004	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 573 bps, Translation length: 158 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000549016.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000406057 (version 1)

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Transcript: ENST00000549016.1 CHST11-005

Summary