Transcript: ENST00000444237.2 SCN11A-002

Description

sodium channel, voltage-gated, type XI, alpha subunit [Source:HGNC Symbol;Acc:10583]

Gene Synonyms

FEPS3, HSAN7, NAV1.9, NaN, Nav1.9, PN5, SCN12A, SNS-2, SNS2

Location

About this transcript

This transcript has 25 exons, is annotated with 42 domains and features, is associated with 43107 variant alleles and maps to 620 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000302328.3	SCN11A-001	6500	1791aa	ENSP00000307599.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33737	Q9UI33	NM_014139.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450244.1	SCN11A-201	6500	1791aa	ENSP00000400945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	NM_001287223.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444237.2	SCN11A-002	5729	1444aa	ENSP00000408028.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456224.3	SCN11A-003	5262	1753aa	ENSP00000416757.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UI33	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 5,729 bps, Translation length: 1,444 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UI33

Version

ENST00000444237.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000343229 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.