Transcript: ENST00000536250.1 SDHAF2-004

Description

succinate dehydrogenase complex assembly factor 2 [Source:HGNC Symbol;Acc:26034]

Gene Synonyms

C11orf79, FLJ20487, PGL2, SDH5

Location

Chromosome 11: 61,197,603-61,205,658 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 3860 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000167985.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000301761.2	SDHAF2-001	2033	166aa	ENSP00000301761.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8007	F5GYJ5 Q9NX18	NM_017841.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542074.1	SDHAF2-006	835	28aa	ENSP00000469670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QY91	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537782.1	SDHAF2-010	559	133aa	ENSP00000469951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QYN2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534878.1	SDHAF2-005	523	141aa	ENSP00000471030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R060	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543265.1	SDHAF2-007	438	88aa	ENSP00000443660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H8E2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542794.1	SDHAF2-003	1077	65aa	ENSP00000439983.1	Nonsense mediated decay		F5H4T4	-	-
ENST00000536250.1	SDHAF2-004	659	65aa	ENSP00000471120.1	Nonsense mediated decay		F5H4T4	-	-
ENST00000359614.5	SDHAF2-011	555	129aa	ENSP00000352630.5	Nonsense mediated decay		F8W679	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 659 bps, Translation length: 65 residues

Version

ENST00000536250.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398441 (version 2)

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Transcript: ENST00000536250.1 SDHAF2-004

Summary