Transcript: ENST00000300917.5 SMG8-201

Description

SMG8 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:25551]

Gene Synonyms

ABC2, C17orf71, FLJ10587, FLJ23205

Location

Chromosome 17: 57,287,371-57,292,608 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 2647 variant alleles and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSG00000167447.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000543872.2	SMG8-001	3477	991aa	ENSP00000438748.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11615	Q8ND04	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000300917.5	SMG8-201	3263	991aa	ENSP00000300917.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11615	Q8ND04	NM_018149.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578922.1	SMG8-002	2178	588aa	ENSP00000462119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8ND04	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582469.1	SMG8-003	1144	271aa	ENSP00000462931.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTD7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580798.1	SMG8-004	583	32aa	ENSP00000463175.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000580498.1	SMG8-005	785	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,263 bps, Translation length: 991 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8ND04

CCDS

This transcript is a member of the Human CCDS set: CCDS11615

Version

ENST00000300917.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000300917.5 SMG8-201

Summary