Transcript: ENST00000299886.4 COG1-001

Description

component of oligomeric golgi complex 1 [Source:HGNC Symbol;Acc:6545]

Gene Synonyms

CDG2G, KIAA1381, LDLB

Location

Chromosome 17: 71,189,129-71,204,646 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 7 domains and features, is associated with 7773 variant alleles and maps to 541 oligo probes.

Gene

This transcript is a product of gene ENSG00000166685.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299886.4	COG1-001	3079	980aa	ENSP00000299886.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11692	J3KSY3 Q8WTW3	NM_018714.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438720.3	COG1-002	4051	962aa	ENSP00000400111.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582672.1	COG1-011	520	102aa	ENSP00000463298.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582512.1	COG1-010	506	126aa	ENSP00000463696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582587.2	COG1-005	739	124aa	ENSP00000462101.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000582973.1	COG1-009	438	26aa	ENSP00000462709.1	Nonsense mediated decay		J3KSY3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577238.1	COG1-007	707	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580271.1	COG1-008	601	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577844.1	COG1-006	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 3,079 bps, Translation length: 980 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8WTW3

CCDS

This transcript is a member of the Human CCDS set: CCDS11692

Version

ENST00000299886.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000441638 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000299886.4 COG1-001

Summary