Transcript: ENST00000537475.1 A2ML1-006

Description

alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:23336]

Gene Synonyms

CPAMD9, FLJ25179

Location

Chromosome 12: 9,020,539-9,039,597 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 6 domains and features, is associated with 8336 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000166535.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299698.7	A2ML1-001	5274	1454aa	ENSP00000299698.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8596	A8K2U0 H0YGG5	NM_144670.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539547.1	A2ML1-004	3460	963aa	ENSP00000438292.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2Z2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541459.1	A2ML1-003	3370	1004aa	ENSP00000443174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGG5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000545692.1	A2ML1-009	570	183aa	ENSP00000440057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GXP1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536789.1	A2ML1-008	462	81aa	ENSP00000440662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYG7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000537475.1	A2ML1-006	1136	182aa	ENSP00000445674.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540049.1	A2ML1-010	592	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000537546.1	A2ML1-011	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545850.1	A2ML1-007	464	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 6, Transcript length: 1,136 bps, Translation length: 182 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000537475.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000395963 (version 1)

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Transcript: ENST00000537475.1 A2ML1-006

Summary