Transcript: ENST00000590191.1 C16orf71-006

Description

chromosome 16 open reading frame 71 [Source:HGNC Symbol;Acc:25081]

Gene Synonyms

DKFZp686H2240, FLJ43261

Location

About this transcript

This transcript has 10 exons, is annotated with 3 domains and features, is associated with 9101 variant alleles and maps to 392 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000299320.5	C16orf71-001	2722	520aa	ENSP00000299320.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10521	K7ENX3 Q8IYS4	NM_139170.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000590191.1	C16orf71-006	2564	537aa	ENSP00000467565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EPW6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000586724.1	C16orf71-004	549	156aa	ENSP00000467133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENX3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586256.1	C16orf71-003	3705	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 2,564 bps, Translation length: 537 residues

Version

ENST00000590191.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000460400 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.