Transcript: ENST00000549876.1 CCDC38-008

Description

coiled-coil domain containing 38 [Source:HGNC Symbol;Acc:26843]

Gene Synonyms

FLJ40089

Location

Chromosome 12: 96,260,826-96,273,449 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 4945 variant alleles and maps to 121 oligo probes.

Gene

This transcript is a product of gene ENSG00000165972.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000344280.3	CCDC38-001	2277	563aa	ENSP00000345470.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9056	F8VY05 Q502W7	NM_182496.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546386.1	CCDC38-002	2599	13aa	ENSP00000448644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546947.1	CCDC38-006	559	62aa	ENSP00000449001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VY05	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546803.1	CCDC38-004	511	47aa	ENSP00000447966.1	Nonsense mediated decay		F8VTU7	-	-
ENST00000549876.1	CCDC38-008	499	90aa	ENSP00000447129.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549752.1	CCDC38-005	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548771.1	CCDC38-007	470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546816.1	CCDC38-009	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 499 bps, Translation length: 90 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000549876.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408633 (version 1)

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Transcript: ENST00000549876.1 CCDC38-008

Summary