Transcript: ENST00000546816.1 CCDC38-009

Description

coiled-coil domain containing 38 [Source:HGNC Symbol;Acc:26843]

Gene Synonyms

FLJ40089

Location

Chromosome 12: 96,260,826-96,263,580 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1079 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSG00000165972.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000546386.1	CCDC38-002	2599	13aa	ENSP00000448644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344280.3	CCDC38-001	2277	563aa	ENSP00000345470.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9056	F8VY05 Q502W7	NM_182496.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546947.1	CCDC38-006	559	62aa	ENSP00000449001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VY05	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546803.1	CCDC38-004	511	47aa	ENSP00000447966.1	Nonsense mediated decay		F8VTU7	-	-
ENST00000549876.1	CCDC38-008	499	90aa	ENSP00000447129.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000549752.1	CCDC38-005	476	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000548771.1	CCDC38-007	470	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000546816.1	CCDC38-009	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 465 bps,

Version

ENST00000546816.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000408632 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000546816.1 CCDC38-009

Summary