Transcript: ENST00000555006.1 OTX2-002

Description

orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:8522]

Gene Synonyms

CPHD6, MCOPS5

Location

Chromosome 14: 57,268,453-57,277,166 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 20 domains and features, is associated with 4341 variant alleles and maps to 317 oligo probes.

Gene

This transcript is a product of gene ENSG00000165588.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000339475.5	OTX2-001	2199	297aa	ENSP00000343819.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9728	F1T0D1 G3V3P9 P32243	NM_021728.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555006.1	OTX2-002	1279	289aa	ENSP00000452336.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41960	F1T0D0 G3V3J3 P32243	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000408990.3	OTX2-007	1082	289aa	ENSP00000386185.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41960	F1T0D0 G3V3J3 P32243	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000554845.1	OTX2-006	908	238aa	ENSP00000451357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3P9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554788.1	OTX2-005	835	35aa	ENSP00000474486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F1T0C9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000555804.1	OTX2-003	797	163aa	ENSP00000451272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V3J3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000554559.1	OTX2-004	715	35aa	ENSP00000450468.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F1T0C9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,279 bps, Translation length: 289 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P32243

CCDS

This transcript is a member of the Human CCDS set: CCDS41960

Version

ENST00000555006.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000411522 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000555006.1 OTX2-002

Summary