Transcript: ENST00000415886.2 CTHRC1-004

Description

collagen triple helix repeat containing 1 [Source:HGNC Symbol;Acc:18831]

Location

Chromosome 8: 104,383,778-104,388,279 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 1967 variant alleles and maps to 117 oligo probes.

Gene

This transcript is a product of gene ENSG00000164932.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000330295.5	CTHRC1-001	1271	243aa	ENSP00000330523.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6299	E5RK99 Q96CG8	NM_138455.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520337.1	CTHRC1-003	1198	229aa	ENSP00000430550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59110	E5RK99 Q96CG8	NM_001256099.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415886.2	CTHRC1-004	571	147aa	ENSP00000416045.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVQ5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000520880.1	CTHRC1-002	560	113aa	ENSP00000430399.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RK99	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 571 bps, Translation length: 147 residues

Version

ENST00000415886.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000380793 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000415886.2 CTHRC1-004

Summary