Transcript: ENST00000441114.1 SHH-005

Description

sonic hedgehog [Source:HGNC Symbol;Acc:10848]

Gene Synonyms

HHG1, HLP3, HPE3, MCOPCB5, SMMCI, TPT, TPTPS

Location

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 5170 variant alleles and maps to 174 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000297261.2	SHH-001	4454	462aa	ENSP00000297261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5942	D9ZGF9 Q15465	NM_000193.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430104.1	SHH-003	677	169aa	ENSP00000396621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JC48	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441114.1	SHH-005	888	126aa	ENSP00000410546.1	Nonsense mediated decay		F8WB84	-	-
ENST00000435425.1	SHH-004	807	123aa	ENSP00000413871.1	Nonsense mediated decay		F8WEH4	-	-
ENST00000472308.1	SHH-002	504	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 888 bps, Translation length: 126 residues

Version

ENST00000441114.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322331 (version 1)