Transcript: ENST00000472224.1 CLRN1-004

Description

clarin 1 [Source:HGNC Symbol;Acc:12605]

Gene Synonyms

RP61, USH3, USH3A

Location

Chromosome 3: 150,659,202-150,690,501 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 13748 variant alleles and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSG00000163646.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000328863.4	CLRN1-201	738	245aa	ENSP00000329158.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56285	P58418	NM_001195794.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000327047.1	CLRN1-001	2359	232aa	ENSP00000322280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3153	C9JWF3 P58418	NM_174878.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295911.2	CLRN1-003	1444	120aa	ENSP00000295911.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35492	C9JWF3 P58418	NM_052995.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468836.1	CLRN1-005	722	115aa	ENSP00000419892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWF3 C9JYI2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000485607.1	CLRN1-002	704	39aa	ENSP00000419244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JWF3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000472224.1	CLRN1-004	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 606 bps,

Version

ENST00000472224.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000354529 (version 1)

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Transcript: ENST00000472224.1 CLRN1-004

Summary