Transcript: ENST00000404666.2 VSNL1-003

Description

visinin-like 1 [Source:HGNC Symbol;Acc:12722]

Gene Synonyms

HLP3, HPCAL3, HUVISL1, VILIP, VILIP-1, VISL1

Location

Chromosome 2: 17,720,393-17,837,345 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 46688 variant alleles and maps to 366 oligo probes.

Gene

This transcript is a product of gene ENSG00000163032.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000406397.1	VSNL1-002	2725	191aa	ENSP00000384719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000295156.4	VSNL1-001	1892	191aa	ENSP00000295156.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	NM_003385.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000404666.2	VSNL1-003	1542	191aa	ENSP00000384014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1689	E7ER47 E9PE24 P62760 Q4ZFX3 Q53RT2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000457525.1	VSNL1-004	576	118aa	ENSP00000405511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ER47 E9PE24 Q53RT2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000451533.1	VSNL1-005	562	104aa	ENSP00000390124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PE24 Q53RT2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000483921.1	VSNL1-006	561	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,542 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62760

CCDS

This transcript is a member of the Human CCDS set: CCDS1689

Version

ENST00000404666.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000323804 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000404666.2 VSNL1-003

Summary