Transcript: ENST00000470578.1 PKDCC-007

Description

protein kinase domain containing, cytoplasmic [Source:HGNC Symbol;Acc:25123]

Gene Synonyms

SGK493, SgK493, VLK, Vlk

Location

Chromosome 2: 42,282,082-42,285,053 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1541 variant alleles and maps to 313 oligo probes.

Gene

This transcript is a product of gene ENSG00000162878.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294964.5	PKDCC-001	2502	493aa	ENSP00000294964.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33186	Q504Y2	NM_138370.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401498.2	PKDCC-003	1550	181aa	ENSP00000385220.2	Nonsense mediated decay		F8WB71	-	-
ENST00000480099.1	PKDCC-008	787	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490302.1	PKDCC-004	1447	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475241.1	PKDCC-011	773	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470578.1	PKDCC-007	765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000475868.1	PKDCC-006	725	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492861.1	PKDCC-002	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485578.1	PKDCC-005	563	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 765 bps,

Version

ENST00000470578.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325766 (version 1)

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Transcript: ENST00000470578.1 PKDCC-007

Summary