Transcript: ENST00000475043.1 PDPN-005

Description

podoplanin [Source:HGNC Symbol;Acc:29602]

Gene Synonyms

AGGRUS, GP36, GP40, Gp38, HT1A-1, OTS8, PA2.26, T1A, T1A-2, T1A2, TI1A, aggrus

Location

Chromosome 1: 13,911,967-13,942,742 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 4 domains and features, is associated with 14409 variant alleles and maps to 237 oligo probes.

Gene

This transcript is a product of gene ENSG00000162493.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000294489.6	PDPN-001	3104	238aa	ENSP00000294489.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30602	H0YA72 Q86YL7	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376057.4	PDPN-002	2801	236aa	ENSP00000365225.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41266	Q86YL7	NM_198389.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376061.4	PDPN-006	1368	120aa	ENSP00000365229.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513143.1	PDPN-007	1305	120aa	ENSP00000425304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475043.1	PDPN-005	849	118aa	ENSP00000426063.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53270	Q86YL7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000510906.1	PDPN-010	786	228aa	ENSP00000426302.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YA72	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000487038.1	PDPN-004	607	120aa	ENSP00000427537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44060	Q86YL7	NM_001006625.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000509009.1	PDPN-009	571	157aa	ENSP00000422977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7ETC6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488631.1	PDPN-003	794	43aa	ENSP00000426210.1	Nonsense mediated decay		D6RH07	-	-
ENST00000506205.1	PDPN-008	476	94aa	ENSP00000421742.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 849 bps, Translation length: 118 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q86YL7

CCDS

This transcript is a member of the Human CCDS set: CCDS53270

Version

ENST00000475043.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000021787 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000475043.1 PDPN-005

Summary