Transcript: ENST00000579146.1 PGAP3-003

Description

post-GPI attachment to proteins 3 [Source:HGNC Symbol;Acc:23719]

Gene Synonyms

AGLA546, CAB2, MGC9753, PER1, PERLD1, PP1498

Location

Chromosome 17: 37,827,375-37,844,310 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 8015 variant alleles and maps to 385 oligo probes.

Gene

This transcript is a product of gene ENSG00000161395.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000300658.4	PGAP3-001	2737	320aa	ENSP00000300658.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32641	B4DVJ3 J3QQL0 Q96FM1	NM_033419.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378011.4	PGAP3-002	2533	269aa	ENSP00000367250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96FM1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000579146.1	PGAP3-003	2220	148aa	ENSP00000463234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QKU0 J3QQL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000429199.2	PGAP3-004	970	299aa	ENSP00000415765.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DGK7 J3QQL0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584856.1	PGAP3-006	538	70aa	ENSP00000463785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QQL0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000584620.1	PGAP3-009	804	150aa	ENSP00000463011.1	Nonsense mediated decay		J3QQL0 J3QRN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000577337.1	PGAP3-010	587	44aa	ENSP00000464308.1	Nonsense mediated decay		J3QRN7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000309862.6	PGAP3-005	3028	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000580898.1	PGAP3-008	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000582276.1	PGAP3-007	546	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,220 bps, Translation length: 148 residues

Version

ENST00000579146.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000444826 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000579146.1 PGAP3-003

Summary