Transcript: ENST00000436839.1 S100A1-004

Description

S100 calcium binding protein A1 [Source:HGNC Symbol;Acc:10486]

Gene Synonyms

S100, S100-alpha, S100A

Location

Chromosome 1: 153,600,940-153,603,101 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 948 variant alleles and maps to 171 oligo probes.

Gene

This transcript is a product of gene ENSG00000160678.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292169.1	S100A1-001	594	94aa	ENSP00000292169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1047	P23297 Q5T7Y5	NM_006271.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368698.3	S100A1-003	784	147aa	ENSP00000357687.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y5 Q5T7Y6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368696.3	S100A1-005	522	53aa	ENSP00000357685.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y4 Q5T7Y5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436839.1	S100A1-004	236	34aa	ENSP00000389708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469893.1	S100A1-002	2619	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 236 bps, Translation length: 34 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000436839.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000089936 (version 1)

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Transcript: ENST00000436839.1 S100A1-004

Summary