Transcript: ENST00000292169.1 S100A1-001

Description

S100 calcium binding protein A1 [Source:HGNC Symbol;Acc:10486]

Gene Synonyms

S100, S100-alpha, S100A

Location

Chromosome 1: 153,600,873-153,604,513 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 1727 variant alleles and maps to 283 oligo probes.

Gene

This transcript is a product of gene ENSG00000160678.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000292169.1	S100A1-001	594	94aa	ENSP00000292169.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1047	P23297 Q5T7Y5	NM_006271.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000368698.3	S100A1-003	784	147aa	ENSP00000357687.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y5 Q5T7Y6	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000368696.3	S100A1-005	522	53aa	ENSP00000357685.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y4 Q5T7Y5	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000436839.1	S100A1-004	236	34aa	ENSP00000389708.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T7Y5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469893.1	S100A1-002	2619	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 594 bps, Translation length: 94 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P23297

CCDS

This transcript is a member of the Human CCDS set: CCDS1047

Version

ENST00000292169.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000089933 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000292169.1 S100A1-001

Summary