Transcript: ENST00000334583.6 RLTPR-001

Description

RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing [Source:HGNC Symbol;Acc:27089]

Gene Synonyms

CARMIL2, CARMIL2b, LRRC16C

Location

Chromosome 16: 67,678,822-67,691,472 forward strand.

About this transcript

This transcript has 38 exons, is annotated with 21 domains and features, is associated with 7784 variant alleles and maps to 1122 oligo probes.

Gene

This transcript is a product of gene ENSG00000159753.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000334583.6	RLTPR-001	4687	1435aa	ENSP00000334958.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45513	Q6F5E8	NM_001013838.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545661.1	RLTPR-002	4119	1372aa	ENSP00000441481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6F5E8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602563.1	RLTPR-004	1048	55aa	ENSP00000473580.1	Nonsense mediated decay		R4GNC4	-	-
ENST00000602368.1	RLTPR-010	953	124aa	ENSP00000473419.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000602321.1	RLTPR-003	4494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602562.1	RLTPR-007	893	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602633.1	RLTPR-008	888	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602705.1	RLTPR-012	638	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602742.1	RLTPR-006	591	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602931.1	RLTPR-009	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602924.1	RLTPR-013	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602467.1	RLTPR-005	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 4,687 bps, Translation length: 1,435 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6F5E8

CCDS

This transcript is a member of the Human CCDS set: CCDS45513

Version

ENST00000334583.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000467858 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000334583.6 RLTPR-001

Summary