Transcript: ENST00000399120.1 HLCS-002

Description

holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) [Source:HGNC Symbol;Acc:4976]

Gene Synonyms

HCS

Location

Chromosome 21: 38,123,493-38,338,773 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 7 domains and features, is associated with 90648 variant alleles and maps to 644 oligo probes.

Gene

This transcript is a product of gene ENSG00000159267.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399120.1	HLCS-002	6466	726aa	ENSP00000382071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13647	C9JCQ9 C9JD75 P50747	NM_001242784.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336648.4	HLCS-001	6010	726aa	ENSP00000338387.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13647	C9JCQ9 C9JD75 P50747	NM_001242785.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448340.1	HLCS-003	780	92aa	ENSP00000392923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCQ9 C9JD75 P50747	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000419461.1	HLCS-005	702	86aa	ENSP00000396370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCQ9 C9JD75	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000427746.1	HLCS-004	666	77aa	ENSP00000396443.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JCQ9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482273.1	HLCS-006	729	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 9, Transcript length: 6,466 bps, Translation length: 726 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50747

CCDS

This transcript is a member of the Human CCDS set: CCDS13647

Version

ENST00000399120.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000194687 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000399120.1 HLCS-002

Summary