Transcript: ENST00000289473.4 NCF1-001

Description

neutrophil cytosolic factor 1 [Source:HGNC Symbol;Acc:7660]

Gene Synonyms

NCF1A, NOXO2, SH3PXD1A, p47phox

Location

Chromosome 7: 74,188,309-74,203,657 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 26 domains and features, is associated with 5223 variant alleles and maps to 1270 oligo probes.

Gene

This transcript is a product of gene ENSG00000158517.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000289473.4	NCF1-001	1396	390aa	ENSP00000289473.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34657	P14598	NM_000265.5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000433458.1	NCF1-014	584	187aa	ENSP00000392870.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J155	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000442021.2	NCF1-011	439	146aa	ENSP00000401935.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C1S1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000443956.3	NCF1-003	803	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486097.1	NCF1-004	555	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000438106.1	NCF1-015	543	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000398421.2	NCF1-002	2354	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000455062.1	NCF1-009	1518	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000449343.2	NCF1-007	1074	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000488197.1	NCF1-012	907	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000464878.1	NCF1-013	774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 1,396 bps, Translation length: 390 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P14598

CCDS

This transcript is a member of the Human CCDS set: CCDS34657

Version

ENST00000289473.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000314560 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000289473.4 NCF1-001

Summary