Transcript: ENST00000563871.1 OTOA-005

Description

otoancorin [Source:HGNC Symbol;Acc:16378]

Gene Synonyms

CT108, DFNB22

Location

Chromosome 16: 21,716,290-21,772,047 forward strand.

About this transcript

This transcript has 20 exons, is associated with 23233 variant alleles and maps to 647 oligo probes.

Gene

This transcript is a product of gene ENSG00000155719.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000388958.3	OTOA-001	3610	1139aa	ENSP00000373610.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10600	B4DZ38 Q7RTW8	NM_144672.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000286149.4	OTOA-003	3471	1153aa	ENSP00000286149.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZ38 Q7RTW8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388956.4	OTOA-002	3466	1060aa	ENSP00000373608.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53994	B4DZ38 Q7RTW8	NM_001161683.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000388957.3	OTOA-004	2703	815aa	ENSP00000373609.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32403	B4DZ38 Q7RTW8	NM_170664.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569064.1	OTOA-007	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563871.1	OTOA-005	4635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563506.1	OTOA-006	2662	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 0, Transcript length: 4,635 bps,

Version

ENST00000563871.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000430024 (version 1)

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Transcript: ENST00000563871.1 OTOA-005

Summary