Transcript: ENST00000444867.1 SEMA3D-002

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:10726]

Gene Synonyms

Sema-Z2, coll-2

Location

About this transcript

This transcript has 10 exons, is annotated with 9 domains and features, is associated with 59123 variant alleles and maps to 229 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000284136.6	SEMA3D-001	6265	777aa	ENSP00000284136.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34676	O95025	NM_152754.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444867.1	SEMA3D-002	1605	294aa	ENSP00000401366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYT6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484038.1	SEMA3D-004	1503	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463315.1	SEMA3D-003	1257	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 1,605 bps, Translation length: 294 residues

Version

ENST00000444867.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000336085 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.