Transcript: ENST00000490603.1 SPHKAP-003

Description

SPHK1 interactor, AKAP domain containing [Source:HGNC Symbol;Acc:30619]

Gene Synonyms

KIAA1678, SKIP

Location

About this transcript

This transcript has 4 exons, is associated with 2078 variant alleles and maps to 145 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392056.3	SPHKAP-002	6917	1700aa	ENSP00000375909.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46537	Q2M3C7	NM_001142644.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344657.5	SPHKAP-001	6804	1671aa	ENSP00000339886.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33389	Q2M3C7	NM_030623.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490603.1	SPHKAP-003	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 544 bps,

Version

ENST00000490603.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331751 (version 1)