Transcript: ENST00000527129.1 CAPN5-005

Description

calpain 5 [Source:HGNC Symbol;Acc:1482]

Gene Synonyms

HTRA3, NCL3, nCL-3

Location

Chromosome 11: 76,830,453-76,835,541 forward strand.

About this transcript

This transcript has 4 exons, is associated with 2282 variant alleles and maps to 292 oligo probes.

Gene

This transcript is a product of gene ENSG00000149260.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278559.3	CAPN5-001	4397	640aa	ENSP00000278559.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8248	E9PS73 O15484	NM_004055.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456580.2	CAPN5-004	2805	680aa	ENSP00000409996.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EV01	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529629.1	CAPN5-003	2333	640aa	ENSP00000432332.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8248	E9PS73 O15484	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527066.1	CAPN5-007	597	97aa	ENSP00000435894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PS73	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000531028.1	CAPN5-006	534	52aa	ENSP00000467244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EP62	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527129.1	CAPN5-005	2564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533889.1	CAPN5-009	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,564 bps,

Version

ENST00000527129.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000382569 (version 1)

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Transcript: ENST00000527129.1 CAPN5-005

Summary